To untrack a single file that has already been added/initialized to your repository, i.e., stop tracking the file but not delete it from your system use:
git rm --cached filename
This answer solved my problem:
First of all, commit all pending changes.
Then run this command:
git rm -r --cached .
This removes everything from the index, then just run:
git add .
Commit it:
git commit -m ".gitignore is now working"
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